MMTSB with AMBER Tutorial

Introduction

This tutorial is designed to show the use of mmtsb tools in the Amber working environment. There is no thread of science in it, simply examples of how the commands are used. Most of the examples come from the tutorial on protein folding, folding of trp cage but this tutorial will not explain where the pdb files came from or what their significance is. Please see that tutorial for more insight into this molecule.

All the documentation for mmtsb tools can be found on the home website
http://mmtsb.scripps.edu/mmtsbtoolset.html
This tutorial will not provide complete descriptions of the tools used, only what we are using the tools for here. Please browse through the tool documentation to find many many more features that may be useful to you. The main tools demonstrated are: